STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD08824.1Glyoxalase family protein. (310 aa)    
Predicted Functional Partners:
SKD08825.1
Phospholipase/carboxylesterase.
    0.992
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
    
 0.896
SKD08827.1
Uncharacterized Fe-S cluster protein YjdI.
       0.768
SKC95851.1
Phospholipase/carboxylesterase.
 
    0.764
SKD08826.1
Putative redox protein.
       0.762
SKD08828.1
Hypothetical protein.
       0.742
SKD07730.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.674
SKD08829.1
Hypothetical protein.
       0.654
SKD08830.1
Hypothetical protein.
       0.654
SKD08823.1
Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family.
       0.589
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.