Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
SKD08850.1Methyltransferase, TIGR00027 family; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity. (290 aa)    
Predicted Functional Partners:
purN
Phosphoribosylglycinamide formyltransferase-1; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
     
 0.533
SKD07775.1
2-polyprenyl-6-methoxyphenol hydroxylase.
  
  
  0.515
SKD08851.1
Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA.
       0.515
SKD07610.1
AraC-type DNA-binding protein.
  
     0.477
SKD08407.1
Amidophosphoribosyltransferase.
     
  0.471
SKD10533.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein; Partial gene; manually curated.
  
   
 0.465
SKD02168.1
Protein of unknown function.
  
     0.449
SKD10519.1
Condensation domain-containing protein.
  
     0.420
SKD08926.1
Glycosyltransferase, MGT family.
  
  
  0.412
SKD07646.1
Peptidase family M23.
  
     0.411
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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