STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD08891.1Hypothetical protein. (603 aa)    
Predicted Functional Partners:
SKD08890.1
Sialate O-acetylesterase.
 
 
   0.848
SKD09047.1
Glycosyl hydrolase family 65, N-terminal domain.
  
  
  0.801
SKC96282.1
Lysophospholipase L1.
  
 
   0.686
SKD10024.1
Glycosyl hydrolase family 20, catalytic domain.
  
  
  0.671
SKD00959.1
Protein of unknown function.
  
  
  0.662
SKD10025.1
Glycosyl hydrolase family 20, catalytic domain.
  
  
  0.656
SKD08892.1
Starch-binding associating with outer membrane.
       0.655
SKD01536.1
Protein of unknown function.
  
  
  0.651
SKD09934.1
Hypothetical protein.
  
 
   0.651
SKD08893.1
TonB-linked outer membrane protein, SusC/RagA family.
       0.645
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.