Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SKD08998.1FecR family protein. (322 aa)    
Predicted Functional Partners:
SKC95553.1
FecR family protein.
  
     0.774
SKD09476.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.720
SKD09978.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.712
SKD09856.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.710
SKD07091.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.698
SKD04890.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.667
SKD09575.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.649
SKD01963.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.644
SKC99909.1
Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.578
SKD08997.1
TonB-dependent Receptor Plug Domain.
 
     0.573
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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