Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SKD09026.1Conserved hypothetical phage tail region protein. (155 aa)    
Predicted Functional Partners:
SKD09022.1
Rhs element Vgr protein.
 
 
   0.986
SKD09023.1
Hypothetical protein.
 
   0.985
SKD09020.1
Hypothetical protein.
 
   0.973
SKD09031.1
Protein of unknown function.
 
 
 
 0.967
SKD09018.1
Hypothetical protein.
 
 
 
 0.966
SKD09019.1
Hypothetical protein.
 
 
 
 0.966
SKD09029.1
Hypothetical protein.
 
 
 0.963
SKD09025.1
Conserved hypothetical phage tail region protein.
 
 
  
0.952
SKC95194.1
Hypothetical protein.
 
 
 0.938
SKC95201.1
Hypothetical protein.
 
   0.936
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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