Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SKD09028.1Hypothetical protein. (313 aa)    
Predicted Functional Partners:
SKD09029.1
Hypothetical protein.
       0.666
SKD09027.1
Hypothetical protein.
       0.653
SKD09031.1
Protein of unknown function.
       0.560
SKD09030.1
Hypothetical protein.
       0.525
SKD09026.1
Conserved hypothetical phage tail region protein.
       0.510
SKD09022.1
Rhs element Vgr protein.
       0.501
SKD09023.1
Hypothetical protein.
       0.495
SKD09025.1
Conserved hypothetical phage tail region protein.
       0.495
SKD09024.1
Hypothetical protein.
       0.487
SKD09021.1
Zn-binding Pro-Ala-Ala-Arg (PAAR) domain-containing protein, incolved in TypeVI secretion.
       0.405
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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