Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SKD09074.1Hypothetical protein. (624 aa)    
Predicted Functional Partners:
SKD09073.1
Beta-mannosidase; Belongs to the glycosyl hydrolase 2 family.
   
  0.795
SKD09075.1
Beta-L-arabinofuranosidase, GH127.
       0.773
SKD09072.1
Protein of unknown function.
       0.768
SKD09071.1
Starch-binding associating with outer membrane.
 
     0.726
SKD09076.1
Pectate lyase superfamily protein.
  
    0.719
SKD09070.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.687
SKC94865.1
Glycosyl hydrolase catalytic core.
 
 
 0.643
SKD09385.1
Glycosyl hydrolases family 2, sugar binding domain.
  
     0.577
SKD09386.1
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
     0.576
SKD08863.1
Glycosyl hydrolases family 2, sugar binding domain.
  
     0.529
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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