Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SKD09082.1Beta-galactosidase. (1356 aa)    
Predicted Functional Partners:
SKD09548.1
YhcH/YjgK/YiaL family protein.
   
 0.615
SKD09081.1
FecR family protein.
       0.550
SKD09083.1
DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family.
 
     0.550
SKD09084.1
CfrBI restriction endonuclease.
       0.478
SKC94865.1
Glycosyl hydrolase catalytic core.
    
 0.471
SKD09080.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.461
SKD09077.1
alpha-L-fucosidase.
 
     0.430
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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