Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SKD09088.1Uncharacterized conserved protein YndB, AHSA1/START domain. (167 aa)    
Predicted Functional Partners:
SKD09089.1
Transcriptional regulator, ArsR family.
 
  
 0.943
SKD09939.1
PhnB protein.
     0.899
SKD08960.1
PhnB protein.
     0.766
SKD09042.1
DNA-binding transcriptional regulator, ArsR family.
 
  
 0.736
SKC97995.1
DNA-binding transcriptional regulator, ArsR family.
 
  
 0.694
SKD09087.1
DoxX protein.
 
     0.687
SKD09742.1
DNA-binding transcriptional regulator, ArsR family.
 
  
 0.626
SKC96903.1
PhnB protein.
     0.595
SKD09090.1
Uncharacterized conserved protein YndB, AHSA1/START domain; Manually curated.
       0.496
SKD10242.1
Aromatic ring-opening dioxygenase, catalytic subunit, LigB family.
  
  
  0.418
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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