STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD09200.13-hydroxyisobutyrate dehydrogenase. (297 aa)    
Predicted Functional Partners:
SKD01695.1
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.837
SKD07730.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.703
SKD09198.1
Signal transduction histidine kinase.
       0.645
SKD09199.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
       0.645
SKD09675.1
Fe-S oxidoreductase.
    
  0.619
SKD09201.1
Transcriptional regulator, HxlR family.
       0.532
SKD08468.1
FAD/FMN-containing dehydrogenase.
 
  
  0.531
SKD06926.1
Hydroxypyruvate reductase.
    
 0.528
SKD04160.1
Hypothetical protein.
 
     0.517
SKD06757.1
Hypothetical protein.
 
     0.508
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.