STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD09220.1AraC-type DNA-binding protein. (285 aa)    
Predicted Functional Partners:
SKC94907.1
AraC-type DNA-binding protein.
  
   0.786
SKD02444.1
AraC-type DNA-binding protein.
  
   0.779
SKC99225.1
AraC family transcriptional regulator.
  
   0.767
SKD01182.1
AraC-type transcriptional regulator N-terminus.
  
   0.756
SKD02863.1
AraC-type DNA-binding protein.
  
   0.756
SKD05307.1
AraC-type DNA-binding protein.
  
   0.754
SKD06241.1
AraC-type DNA-binding protein.
  
   0.745
SKD09318.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
 
 
 0.740
SKD04567.1
AraC-type DNA-binding protein.
  
   0.732
SKD09885.1
AraC-type DNA-binding protein.
  
   0.718
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.