STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD09280.1Capsular exopolysaccharide family. (787 aa)    
Predicted Functional Partners:
nuoC
NADH-quinone oxidoreductase subunit C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. In the N-terminal section; belongs to the complex I 30 kDa subunit family.
     
 0.999
SKD09279.1
Polysaccharide export outer membrane protein.
 
 0.999
SKD09289.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
 
 0.999
SKD09648.1
Polysaccharide export outer membrane protein.
 
 0.997
SKD05043.1
Polysaccharide export outer membrane protein.
 
 0.996
SKD07921.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
  
 0.990
SKC94658.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
 
 0.953
SKD09661.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
 
 0.942
SKD04951.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
 
 0.938
SKD09647.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
 
 
 0.919
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.