STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD10003.1TonB-linked outer membrane protein, SusC/RagA family. (1036 aa)    
Predicted Functional Partners:
SKD10004.1
Starch-binding associating with outer membrane.
 
     0.941
SKD10013.1
Starch-binding associating with outer membrane.
  
     0.774
SKD06169.1
Starch-binding associating with outer membrane.
  
     0.691
SKD01453.1
SusD family protein.
  
     0.682
SKD08134.1
SusD family protein.
  
     0.671
SKD03036.1
SusD family protein.
  
     0.658
SKD05615.1
TonB family C-terminal domain-containing protein.
  
  0.652
SKD07104.1
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
  0.636
SKC99260.1
Starch-binding associating with outer membrane.
  
     0.635
SKD07006.1
Protein TonB.
  
  0.634
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.