STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD10282.1HmuY protein. (233 aa)    
Predicted Functional Partners:
SKD08564.1
Gliding motility-associated C-terminal domain-containing protein.
  
  0.805
SKD05093.1
Outer membrane receptor for ferrienterochelin and colicins.
 
  
 0.796
SKD10278.1
Outer membrane receptor for ferrienterochelin and colicins.
 
     0.795
SKD10283.1
HmuY protein.
 
    
0.793
SKD10284.1
Hypothetical protein.
       0.715
SKD08898.1
Starch-binding associating with outer membrane.
  
  0.684
SKD10285.1
Hypothetical protein.
       0.675
SKC99201.1
Hypothetical protein.
  
     0.674
SKD09913.1
SusD family protein.
  
  0.655
SKC99435.1
Hypothetical protein.
  
     0.625
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.