STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD10427.1Response regulator receiver domain-containing protein. (139 aa)    
Predicted Functional Partners:
SKD10428.1
Signal transduction histidine kinase.
 
  
 0.862
SKD10429.1
Hypothetical protein.
 
     0.811
SKD10430.1
Hypothetical protein.
 
     0.694
SKD10431.1
ThiF family protein.
 
     0.595
SKC97078.1
Signal transduction histidine kinase.
  
   
 0.554
SKD07697.1
Tetratricopeptide repeat-containing protein.
  
     0.482
SKD07994.1
Tryptophan 2,3-dioxygenase.
  
     0.440
SKD04911.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.410
SKC97729.1
Tryptophan 2,3-dioxygenase.
  
     0.402
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.