STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ08150.1Predicted dehydrogenase. (336 aa)    
Predicted Functional Partners:
SFQ75697.1
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase.
  
  
 0.821
SFQ75725.1
5-deoxyglucuronate isomerase.
  
  
 0.815
SFQ75705.1
2-keto-myo-inositol dehydratase.
  
 
 0.764
SFQ08108.1
Permease of the drug/metabolite transporter (DMT) superfamily.
 
     0.748
SFQ08132.1
2-keto-3-deoxy-L-fuconate dehydrogenase.
  
 
  0.747
SFQ59564.1
4-hydroxyphenylpyruvate dioxygenase.
 
 
 0.727
SFQ59479.1
Sugar phosphate isomerase/epimerase.
 
 
 0.726
SFQ08170.1
Altronate hydrolase.
 
     0.714
SFQ08205.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.685
SFQ07829.1
Nucleoside-diphosphate-sugar epimerase.
 
 
  0.655
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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