STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ18862.1Hypothetical protein. (309 aa)    
Predicted Functional Partners:
SFQ18772.1
Thymidylate kinase.
 
     0.862
SFQ18748.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6).
       0.845
SFQ18798.1
DNA polymerase-3 subunit delta'.
       0.845
SFQ18819.1
TatD DNase family protein.
       0.845
SFQ18840.1
Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase.
       0.845
SFQ18719.1
Sporulation related domain-containing protein.
       0.801
SFQ61332.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
 
  
 0.768
SFQ46090.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
  
 0.737
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.