STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ22349.1Transcriptional regulator, TraR/DksA family. (157 aa)    
Predicted Functional Partners:
SFQ38372.1
DNA-directed RNA polymerase subunit beta'.
  
 
 
 0.981
SFQ38352.1
DNA-directed RNA polymerase subunit beta.
  
 
 0.966
SFQ64351.1
DNA-directed RNA polymerase subunit omega.
 
 
 
 0.959
SFQ69181.1
RNA polymerase primary sigma factor.
 
 
 
 0.939
SFQ38975.1
DNA-directed RNA polymerase subunit alpha.
  
 
 0.936
SFQ54559.1
RNA-binding protein Hfq.
   
  
 0.918
SFQ08552.1
Cobalamin biosynthesis protein CobW.
  
  
 0.808
SFQ66737.1
GTPase, G3E family.
  
  
 0.808
SFQ69425.1
RNA polymerase, sigma 32 subunit, RpoH.
 
 
 0.803
SFQ54274.1
LSU ribosomal protein L13P.
  
    0.801
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.