STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ25742.1LytTr DNA-binding domain-containing protein. (274 aa)    
Predicted Functional Partners:
SFQ25767.1
DNA-binding response regulator, LytR/AlgR family.
      
0.773
SFQ51661.1
Glutamate-5-semialdehyde dehydrogenase.
    
   0.654
SFQ79909.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
    
 0.638
SFQ06038.1
Signal transduction histidine kinase.
    
 0.573
SFQ05661.1
Signal transduction histidine kinase.
    
 0.534
SFQ04440.1
Response regulator receiver domain-containing protein.
    
 0.517
SFQ48008.1
PAS/PAC sensor hybrid histidine kinase.
    
 0.491
SFQ73130.1
PAS domain S-box-containing protein.
    
 0.491
SFQ01265.1
Signal transduction histidine kinase.
    
 0.465
SFQ06022.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
     
 0.427
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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