STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ39210.1Hypothetical protein. (244 aa)    
Predicted Functional Partners:
SFQ39223.1
Protein translocase subunit yidC.
  
  
 0.878
SFQ39198.1
GTP-binding protein.
  
    0.865
SFQ39186.1
N-acetylglutamate kinase.
  
    0.653
SFQ39234.1
tRNA 2-thiocytidine biosynthesis protein TtcA.
       0.652
SFQ11167.1
Phosphoribosylformylglycinamidine synthase subunit I.
   
    0.617
SFQ39160.1
Phosphohistidine phosphatase.
       0.617
SFQ39173.1
Hypothetical protein.
       0.558
SFQ29821.1
D-tyrosyl-tRNA(Tyr) deacylase.
   
    0.476
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.