STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ39407.1Excinuclease ABC subunit C. (620 aa)    
Predicted Functional Partners:
SFQ55782.1
Excinuclease ABC subunit B.
 0.999
SFQ25107.1
Excinuclease ABC subunit A.
 
 0.996
SFQ49109.1
DNA mismatch repair protein MutL.
 
 
 0.974
SFQ76851.1
Transcription-repair coupling factor.
  
  
 0.937
SFQ69664.1
ATP-dependent DNA helicase, Rep family.
 
  
 0.921
SFQ47081.1
DNA-(apurinic or apyrimidinic site) lyase.
  
 
 0.892
SFQ46101.1
DNA mismatch repair protein MutS.
 
  
 0.888
SFQ72201.1
Holliday junction DNA helicase subunit RuvB.
 
 
 0.873
SFQ72206.1
Holliday junction DNA helicase subunit RuvA.
  
  
 0.859
SFQ39420.1
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.
     
 0.845
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.