STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ35162.1Transcriptional regulator, TetR family. (204 aa)    
Predicted Functional Partners:
SFQ01057.1
Predicted DNA-binding protein, contains Ribbon-helix-helix (RHH) domain.
   
    0.617
SFQ35182.1
Rubrerythrin.
       0.600
SFQ35198.1
Hypothetical protein.
 
     0.523
SFQ69148.1
Flp pilus assembly protein TadG.
  
   
 0.492
SFQ69136.1
Flp pilus assembly protein TadG.
  
   
 0.485
SFQ35228.1
Hypothetical protein.
       0.444
SFQ35246.1
2-haloacid dehalogenase.
       0.444
SFQ35210.1
S-formylglutathione hydrolase.
     
 0.441
SFQ35268.1
Ornithine cyclodeaminase.
       0.428
SFQ73314.1
peptidyl-tRNA hydrolase.
   
    0.408
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.