STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ44245.1Ribose-5-phosphate isomerase. (149 aa)    
Predicted Functional Partners:
SFQ61257.1
Glycine hydroxymethyltransferase.
 
 
  0.954
SFQ61387.1
Uracil phosphoribosyltransferase.
 
  
 0.913
SFQ45092.1
3-demethylubiquinone-9 3-methyltransferase.
      0.884
SFQ30195.1
Transketolase subunit B.
    
 0.877
SFQ30220.1
Transketolase subunit A.
    
 0.868
SFQ52911.1
Glycine dehydrogenase.
    
 0.846
SFQ24472.1
Transketolase.
  
 
 0.829
SFQ41294.1
Transketolase.
  
 
 0.829
SFQ62164.1
Transketolase.
  
 
 0.829
SFQ60024.1
Ribose-phosphate pyrophosphokinase.
    
 0.816
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.