STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ46544.1Hypothetical protein. (90 aa)    
Predicted Functional Partners:
SFQ46556.1
Glycerol-3-phosphate dehydrogenase (NAD(P)+).
      0.879
SFQ46533.1
Predicted RNA-binding protein, contains PUA-like domain.
     
 0.870
SFQ46566.1
O-sialoglycoprotein endopeptidase.
     
 0.845
SFQ46576.1
uroporphyrinogen-III synthase.
 
     0.748
SFQ46590.1
Uncharacterized conserved protein.
 
     0.672
SFQ46601.1
HemY protein.
       0.602
SFQ69600.1
phosphoribosyl-ATP pyrophosphatase.
  
    0.518
SFQ61792.1
Hypothetical protein.
   
    0.508
SFQ36866.1
Methionine aminopeptidase, type I.
  
    0.428
SFQ20130.1
Sec-independent protein translocase protein TatA.
   
    0.426
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.