STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ48494.1Anti-sigma B factor antagonist. (116 aa)    
Predicted Functional Partners:
SFQ45960.1
sigma-B regulation protein RsbU (phosphoserine phosphatase).
 
 0.999
SFQ47021.1
Rod binding protein.
   
    0.999
SFQ48480.1
Serine/threonine-protein kinase RsbW.
 
 0.999
SFQ69009.1
Haem-NO-binding.
 
    0.999
SFQ46944.1
Flagellar basal-body rod protein FlgB.
   
    0.998
SFQ19795.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
   
  0.996
SFQ19816.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
   
  0.992
SFQ53099.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
  
  0.991
SFQ35378.1
Flagellar hook protein FlgE.
   
    0.982
SFQ46628.1
Flagellar hook protein FlgE.
   
    0.982
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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