STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ52813.1Amino acid ABC transporter substrate-binding protein, PAAT family. (303 aa)    
Predicted Functional Partners:
SFQ52805.1
Cytochrome c-550 PedF.
 
  
 0.971
SFQ52789.1
ABC-2 type transport system permease protein.
 
  
  0.942
SFQ52795.1
ABC-2 type transport system ATP-binding protein.
 
  
  0.929
SFQ52766.1
NitT/TauT family transport system substrate-binding protein.
 
  
 0.881
SFQ52725.1
Signal transduction histidine kinase.
  
 
 0.866
SFQ52780.1
Hypothetical protein.
 
   
 0.857
SFQ52821.1
Hypothetical protein.
  
 
  0.855
SFQ39133.1
L-glutamine ABC transporter membrane protein.
  
 0.849
SFQ58007.1
PQQ-dependent catabolism-associated beta-propeller protein.
 
  
  0.841
SFQ78006.1
PQQ-dependent catabolism-associated beta-propeller protein.
 
  
  0.841
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.