STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ51923.1DNA-binding transcriptional regulator, LysR family. (296 aa)    
Predicted Functional Partners:
SFQ51322.1
Transcriptional regulator, LysR family.
  
     0.659
SFQ67952.1
DNA-binding transcriptional regulator, LysR family.
  
     0.634
SFQ51915.1
Choline dehydrogenase.
 
     0.609
SFQ41067.1
DNA-binding transcriptional regulator, LysR family.
  
     0.600
SFQ34461.1
LysR family transcriptional regulator, glycine cleavage system transcriptional activator.
  
     0.598
SFQ20543.1
Transcriptional regulator, LysR family.
  
     0.577
SFQ56365.1
DNA-binding transcriptional regulator, LysR family.
  
     0.527
SFQ77509.1
Transcriptional regulator, LysR family.
  
     0.520
SFQ68033.1
LysR family transcriptional regulator, glycine cleavage system transcriptional activator.
  
     0.514
SFQ12589.1
Transcriptional regulator, LysR family.
  
     0.510
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.