STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ55830.1lysyl-tRNA synthetase, class I. (525 aa)    
Predicted Functional Partners:
SFQ64603.1
Hypothetical protein.
  
    0.796
SFQ55819.1
Protein of unknown function.
       0.721
SFQ11464.1
Hypothetical protein.
  
     0.714
SFQ38264.1
Transcription antitermination protein nusG.
   
    0.714
SFQ55842.1
Tellurite resistance protein.
       0.713
SFQ63884.1
LSU ribosomal protein L19P.
   
    0.698
SFQ03189.1
Phosphatidylglycerol lysyltransferase.
    
 0.687
SFQ19747.1
Replicative DNA helicase.
 
     0.559
SFQ46338.1
Predicted lipid-binding transport protein, Tim44 family.
  
     0.559
SFQ41220.1
glutamyl-tRNA synthetase /glutamate--tRNA(Gln) ligase.
  
  
 0.545
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.