STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ62164.1Transketolase. (671 aa)    
Predicted Functional Partners:
SFQ62155.1
Transaldolase.
  
 0.994
SFQ76740.1
Glucose-6-phosphate isomerase.
 
 0.940
SFQ61102.1
6-phosphogluconate dehydrogenase.
  
 
 0.921
SFQ27649.1
Ribose-5-phosphate isomerase.
   
 0.920
SFQ73009.1
Ribulose-5-phosphate 3-epimerase.
 0.917
SFQ21205.1
IMP dehydrogenase.
  
 0.916
SFQ41402.1
Ribulose-5-phosphate 3-epimerase.
 0.916
SFQ62190.1
Ribose 5-phosphate isomerase B.
  
 
 0.904
SFQ41270.1
D-fructose 1,6-bisphosphatase.
  
 
 0.891
SFQ62183.1
Triosephosphate isomerase.
  
 0.889
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.