STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ60417.13-hydroxybutyryl-CoA dehydratase. (147 aa)    
Predicted Functional Partners:
SFQ61424.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
  
 0.880
SFQ00680.1
Hypothetical protein.
    
 0.817
SFQ40553.1
crotonyl-CoA carboxylase/reductase.
 
 0.814
SFQ05677.1
Polyhydroxyalkanoate synthase.
 
  
 0.808
SFQ34593.1
Enoyl-CoA hydratase/carnithine racemase.
  
 0.804
SFQ24077.1
Enoyl-CoA hydratase.
  
 0.803
SFQ28081.1
Polyhydroxyalkanoate synthase.
 
  
 0.796
SFQ10681.1
Phosphate butyryltransferase.
  
  
0.774
SFQ53686.1
[Acyl-carrier-protein] S-malonyltransferase.
     
 0.757
SFQ19989.1
NADP-dependent 3-hydroxy acid dehydrogenase YdfG.
  
  
  0.755
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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