STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ67452.1Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family. (312 aa)    
Predicted Functional Partners:
SFQ67470.1
Allantoin racemase.
 
  
  0.959
SFQ67442.1
Glutamate carboxypeptidase.
 
  
  0.943
SFQ67509.1
Putative spermidine/putrescine transport system substrate-binding protein.
 
     0.920
SFQ67480.1
Putative spermidine/putrescine transport system permease protein.
 
     0.891
SFQ67436.1
(S)-ureidoglycine aminohydrolase.
 
     0.872
SFQ67500.1
Putative spermidine/putrescine transport system ATP-binding protein.
 
     0.862
SFQ67519.1
Acetolactate synthase large subunit.
 
   
 0.841
SFQ67462.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
 
    
0.836
SFQ67489.1
Putative spermidine/putrescine transport system permease protein.
 
     0.819
SFQ67428.1
DNA-binding transcriptional regulator, LysR family.
  
 
   0.757
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.