STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ66924.1NADP-dependent 3-hydroxy acid dehydrogenase YdfG. (233 aa)    
Predicted Functional Partners:
SFQ66915.1
Transcriptional regulator, MarR family.
 
  
  0.950
SFQ57179.1
DNA repair exonuclease SbcCD nuclease subunit.
    
 0.906
SFQ63446.1
Choline-sulfatase.
   
 0.881
SFQ04782.1
Tyrosine phosphatase family protein.
    
  0.841
SFQ66930.1
Glycine/D-amino acid oxidase.
 
     0.836
SFQ66940.1
Peptide/nickel transport system substrate-binding protein.
 
     0.820
SFQ66975.1
Glycine/D-amino acid oxidase.
 
     0.820
SFQ44224.1
Ubiquinol-cytochrome c reductase cytochrome b subunit.
    
  0.815
SFQ05419.1
NADH dehydrogenase subunit M.
    
  0.806
SFQ04734.1
Sulfate permease, SulP family.
    
  0.799
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.