STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ69347.1NusB antitermination factor. (160 aa)    
Predicted Functional Partners:
SFQ38491.1
SSU ribosomal protein S10P.
   
 0.995
SFQ45051.1
NusA antitermination factor.
 
 0.990
SFQ69336.1
6,7-dimethyl-8-ribityllumazine synthase.
  
  
 0.990
SFQ64351.1
DNA-directed RNA polymerase subunit omega.
 
 0.983
SFQ38264.1
Transcription antitermination protein nusG.
   
 0.973
SFQ38975.1
DNA-directed RNA polymerase subunit alpha.
    
 0.964
SFQ38352.1
DNA-directed RNA polymerase subunit beta.
  
 0.963
SFQ38372.1
DNA-directed RNA polymerase subunit beta'.
  
 0.957
SFQ69329.1
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II.
   
 
 0.935
SFQ62135.1
6,7-dimethyl-8-ribityllumazine synthase.
  
  
 0.926
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.