STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ71117.1Type VI secretion system protein ImpC. (493 aa)    
Predicted Functional Partners:
SFQ71108.1
Type VI secretion system protein ImpB.
 0.999
SFQ71194.1
Type IV / VI secretion system protein, DotU family.
 
  
 0.994
SFQ71097.1
Type VI secretion system secreted protein Hcp.
  
 0.993
SFQ71157.1
Type VI secretion system protein VasG.
 0.993
SFQ71140.1
Type VI secretion protein, VC_A0110 family.
 
  
 0.990
SFQ71205.1
Type VI protein secretion system component VasK.
 
 
 0.984
SFQ71187.1
Type VI secretion system protein ImpJ.
 
 
 0.982
SFQ71087.1
Type VI secretion system protein ImpA.
 
 
 0.979
SFQ71172.1
FHA domain protein.
 
  
 0.957
SFQ71146.1
Predicted component of the type VI protein secretion system.
  
 
 0.939
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.