STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ73009.1Ribulose-5-phosphate 3-epimerase. (228 aa)    
Predicted Functional Partners:
SFQ30220.1
Transketolase subunit A.
  
 0.989
SFQ24472.1
Transketolase.
 0.920
SFQ41279.1
Phosphoribulokinase.
  
 
 0.920
SFQ30195.1
Transketolase subunit B.
 
 
 0.918
SFQ41294.1
Transketolase.
 0.918
SFQ62164.1
Transketolase.
 0.917
SFQ27649.1
Ribose-5-phosphate isomerase.
  
 0.875
SFQ72998.1
Phosphoglycolate phosphatase.
  
  
 0.869
SFQ61102.1
6-phosphogluconate dehydrogenase.
   
 0.861
SFQ36185.1
Flagellar protein FliS.
    
   0.842
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.