STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ73086.12-haloacid dehalogenase. (228 aa)    
Predicted Functional Partners:
SFQ01589.1
Pimeloyl-ACP methyl ester carboxylesterase.
 
 
 0.899
SFQ73076.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
 
 0.879
SFQ69264.1
Diaminohydroxyphosphoribosylaminopyrimidine deaminase.
 
  
 0.828
SFQ73065.1
L-threonine ammonia-lyase.
       0.803
SFQ02625.1
Putative hydrolase of the HAD superfamily.
  
  
 0.731
SFQ54400.1
GMP synthase (glutamine-hydrolyzing).
    
  0.706
SFQ73056.1
3-oxoadipate enol-lactonase.
  
 
 0.705
SFQ21205.1
IMP dehydrogenase.
    
 0.697
SFQ73047.1
Pimeloyl-ACP methyl ester carboxylesterase.
    
 0.693
SFQ73096.1
FKBP-type peptidyl-prolyl cis-trans isomerase 2.
       0.607
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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