STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ72927.1D-galactarolactone isomerase. (287 aa)    
Predicted Functional Partners:
SFQ72918.1
D-galactarolactone cycloisomerase.
 
  
 0.982
SFQ62241.1
Uronate dehydrogenase.
 
  
 0.948
SFQ72911.1
5-dehydro-4-deoxyglucarate dehydratase.
 
  
 0.918
SFQ76408.1
Phenol 2-monooxygenase.
  
  
 0.796
SFQ67758.1
Ferredoxin-NADP reductase.
     
 0.775
SFQ72937.1
2-keto-3-deoxygluconate kinase.
       0.773
SFQ72948.1
Lysophospholipase L1.
       0.773
SFQ72956.1
Transcriptional regulator, GntR family.
     0.698
SFQ72895.1
NADP-dependent aldehyde dehydrogenase.
       0.696
SFQ07569.1
Hypothetical protein.
    
 0.681
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.