STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ73888.1Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase. (465 aa)    
Predicted Functional Partners:
SFQ64264.1
methionyl-tRNA formyltransferase.
 
   
 0.899
SFQ44675.1
Glutamate synthase (NADPH) large subunit.
  
 
 0.815
SFQ49378.1
phenylacetate-CoA ligase.
   
 0.800
SFQ53876.1
Pyruvate dehydrogenase E1 component beta subunit.
  
 0.748
SFQ73489.1
L-proline dehydrogenase.
 
0.742
SFQ44214.1
Ubiquinol-cytochrome c reductase iron-sulfur subunit.
    
 0.725
SFQ74801.1
Ubiquinol-cytochrome c reductase iron-sulfur subunit.
    
 0.725
SFQ52911.1
Glycine dehydrogenase.
     
 0.694
SFQ24286.1
Indolepyruvate ferredoxin oxidoreductase.
    
 0.693
SFQ24019.1
Citrate synthase.
  
 0.681
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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