STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ73755.1Transcriptional regulator, LysR family. (307 aa)    
Predicted Functional Partners:
SFQ06193.1
Transcriptional regulator, LysR family.
  
     0.738
SFQ36742.1
Transcriptional regulator, LysR family.
  
     0.724
SFQ58064.1
Transcriptional regulator, LysR family.
  
     0.698
SFQ58208.1
DNA-binding transcriptional regulator, LysR family.
  
     0.691
SFQ68033.1
LysR family transcriptional regulator, glycine cleavage system transcriptional activator.
  
     0.634
SFQ37491.1
Transcriptional regulator, LysR family.
  
     0.583
SFQ80378.1
Transcriptional regulator, LysR family.
  
     0.566
SFQ64026.1
DNA-binding transcriptional regulator, LysR family.
  
     0.555
SFQ56365.1
DNA-binding transcriptional regulator, LysR family.
  
     0.534
SFQ73762.1
Hypothetical protein.
       0.528
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.