STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ75736.1Hydroxypyruvate isomerase. (259 aa)    
Predicted Functional Partners:
SFQ75725.1
5-deoxyglucuronate isomerase.
 
     0.835
SFQ75705.1
2-keto-myo-inositol dehydratase.
 
  
  0.780
SFQ75715.1
Hypothetical protein.
       0.741
SFQ75697.1
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase.
 
     0.667
SFQ07772.1
Lactate dehydrogenase.
   
 
 0.630
SFQ60766.1
Hydroxypyruvate reductase.
   
 
 0.630
SFQ76203.1
Glyoxylate reductase.
   
 
 0.630
SFQ75689.1
5-dehydro-2-deoxygluconokinase.
 
     0.621
SFQ02602.1
Glyoxylate/hydroxypyruvate reductase A.
    
  0.616
SFQ47500.1
Glyoxylate/hydroxypyruvate reductase A.
    
  0.616
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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