STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ76760.1cysteinyl-tRNA synthetase. (458 aa)    
Predicted Functional Partners:
SFQ53860.1
Serine O-acetyltransferase.
 
 
 0.988
SFQ78734.1
Serine O-acetyltransferase.
 
 
 0.975
SFQ11790.1
Cysteine synthase A.
  
 0.969
SFQ10768.1
Serine O-acetyltransferase.
  
 
 0.940
SFQ69586.1
23S rRNA (guanosine2251-2'-O)-methyltransferase.
 
 
 0.880
SFQ28154.1
threonyl-tRNA synthetase.
 
  
 0.851
SFQ51719.1
tRNA/rRNA methyltransferase.
   
  0.796
SFQ53368.1
seryl-tRNA synthetase.
 
 
 0.781
SFQ48115.1
leucyl-tRNA synthetase.
  
 
 0.765
SFQ72185.1
valyl-tRNA synthetase.
 
  
 0.756
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.