STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ76951.1Pseudouridine-5'-phosphate glycosidase. (301 aa)    
Predicted Functional Partners:
SFQ76961.1
Sugar or nucleoside kinase, ribokinase family.
 
 
 0.993
SFQ61387.1
Uracil phosphoribosyltransferase.
    
  0.888
SFQ71821.1
Methylthioadenosine phosphorylase.
  
 
  0.881
SFQ03597.1
Dihydroorotate oxidase B, catalytic subunit.
   
 
  0.874
SFQ61354.1
Thymidine phosphorylase.
    
  0.874
SFQ54012.1
Purine nucleosidase.
 
 
  0.754
SFQ76972.1
Protein of unknown function.
       0.707
SFQ76941.1
Uncharacterized membrane protein.
       0.702
SFQ67175.1
Dihydroorotate oxidase B, catalytic subunit.
   
 
  0.694
SFQ46077.1
Ribokinase.
  
 
 0.531
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.