STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ80352.1LysR family transcriptional regulator, glycine cleavage system transcriptional activator. (231 aa)    
Predicted Functional Partners:
SFQ80331.1
Putative spermidine/putrescine transport system substrate-binding protein.
 
     0.728
SFQ80341.1
Putative spermidine/putrescine transport system ATP-binding protein.
 
 
  0.689
SFQ03702.1
DNA-binding transcriptional regulator, LysR family.
  
     0.578
SFQ51158.1
Putative spermidine/putrescine transport system substrate-binding protein.
  
     0.572
SFQ80361.1
Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase.
 
     0.557
SFQ80370.1
Gamma-butyrobetaine dioxygenase.
 
     0.553
SFQ80378.1
Transcriptional regulator, LysR family.
 
    
0.464
SFQ34461.1
LysR family transcriptional regulator, glycine cleavage system transcriptional activator.
  
     0.409
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.