STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ80387.1Integrase core domain-containing protein. (159 aa)    
Predicted Functional Partners:
SFQ79466.1
Putative transposase.
 
     0.975
SFQ80695.1
HTH-like domain-containing protein.
 
     0.966
SFQ68216.1
HTH-like domain-containing protein.
 
     0.965
SFQ79881.1
Putative transposase.
   
 0.914
SFQ79197.1
Putative transposase.
    0.607
SFQ68205.1
Putative transposase.
    0.605
SFQ79470.1
Putative transposase.
    0.605
SFQ80689.1
Putative transposase.
    0.605
SFQ79223.1
Transposase InsO and inactivated derivatives.
  
     0.477
SFQ79890.1
Putative transposase.
    0.469
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.