STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0015Conserved hypothetical protein; Putative inner membrane protein as shown by TMHMM hits. (702 aa)    
Predicted Functional Partners:
ABO_0017
Secretion protein HlyD family; Family membership.
 
  
 0.946
ABO_1136
(efflux transporter, membrane fusion protein, putative) identified by match to TIGR protein family HMMTIGR01730 InterPro: HlyD family secretion protein; Family membership; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.824
ABO_0016
Conserved hypothetical protein; Identified by sequence similarity.
     
 0.802
ABO_0014
Transcriptional regulator MarR family identified by sequencesimilarity; putative InterPro: Bacterial regulatory protein MarR family; Family membership.
     
 0.778
fimD
Type 1 pili subunit FimD; Identified by match to PFAM protein family HMMPF00577 InterPro: Fimbrial biogenesis outer membrane usher protein; Specificity unclear.
  
     0.641
fimC
Type 1 pili chaperone protein FimC; Identified by match to PFAM protein family HMMPF02753 and sequence similarity; Specificity unclear.
  
     0.637
ABO_0013
Conserved hypothetical protein.
  
    0.489
ABO_0018
Hypothetical protein.
       0.456
algJ
Alginate O-acetylation protein AlgJ; High confidence in function and specificity.
  
     0.435
alg8
Alginate biosynthesis protein Alg8; Function unclear.
  
     0.424
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.