STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0029Hypothetical protein. (175 aa)    
Predicted Functional Partners:
ABO_2387
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF03596.
  
     0.686
ABO_0028
Transcriptional regulator LysR family identified by match to PFAM protein family HMMPF03466 InterPro: Bacterial regulatory protein LysR family; High confidence in function and specificity.
       0.671
ABO_1022
(metal ion transporter putative) identified by match to PFAM protein family HMMPF03471 InterPro: Domain of unknown function DUF21; Family membership.
  
     0.505
acpD
Acyl carrier protein phosphodiesterase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.
       0.469
ABO_0669
Hypothetical protein predicted by Glimmer/Critica.
  
    0.457
ABO_0437
Conserved hypothetical protein.
  
     0.428
alkS
alkB1GHJ regulator; This protein activates the expression of AlkB1 in the presence of alkanes.
  
     0.408
ABO_0026
Glutathione S-transferase domain protein identified by match to PFAM protein family HMMPF00043 InterPro: Glutathione S-transferase C terminus; Family membership.
       0.405
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.