Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABO_0053Acetyltransferase, CysE/LacA/LpxA/NodL family; (conserved hypothetical protein homologous to acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase) identified by match to PFAM protein family HMMPF00132 InterPro: Bacterial transferase hexapeptide repeat; Family membership. (206 aa)    
Predicted Functional Partners:
wzc
Putative tyrosine-protein kinase Wzc; Family membership; deleted EC_number 2.7.1.112.
  
  
 0.666
algA
(mannose-1-phosphateguanylyltransferase/mannose-6-p hosphate isomerase) identified by match to PFAM protein family HMMPF00483 InterPro: ADP-glucose pyrophosphorylase; High confidence in function and specificity; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.589
ABO_1784
Non-ribosomal peptide synthase fragment, contains condensation, fatty-acid-CoA ligase and thioesterase domains. identified by sequence similarity; putative InterPro: AMP-dependent synthetase and ligase; Family membership.
  
  
 0.571
ABO_0927
(aminotransferase class I) identified by match to TIGR protein family HMMTIGR01265 InterPro: DegT/DnrJ/EryC1/StrS family The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. This enzyme is probably involved in the (regulation) of the cell wall biogenesis; High confidence in function and specificity.
  
  
 0.568
ABO_0052
Conserved hypothetical protein.
       0.540
birA
biotin-[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
  
  
 0.514
wbpM
Polysaccharide biosynthesis protein; Identified by sequence similarity; putative InterPro: Polysaccharide biosynthesis protein CapD type; Family membership.
 
  
 0.492
ABO_0054
Transcriptional regulator TetR family identified by sequencesimilarity; putative InterPro: Bacterial regulatory proteins TetR family; Family membership.
     
 0.426
ABO_0925
Sugar transferase, putative; Identified by match to PFAM protein family HMMPF02397 This Pfam family represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways; Family membership.
  
  
 0.420
ABO_0943
Conserved hypothetical protein.
  
  
 0.420
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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