Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABO_0055Acyltransferase identified by match to PFAM protein family HMMPF04241 InterPro: Phospholipid and glycerol acyltransferase (from motifs_6.msf); Family membership. (606 aa)    
Predicted Functional Partners:
fadB
long-chain-fatty-acid-CoA ligase, putative; Identified by match to TIGR protein family HMMTIGR01734; High confidence in function and specificity.
  
 0.908
alkK
Medium-chain-fatty-acid CoA ligase; Identified by match to TIGR protein family HMMTIGR01734 InterPro: AMP-dependent synthetase and ligase; High confidence in function and specificity.
  
 0.908
ABO_0054
Transcriptional regulator TetR family identified by sequencesimilarity; putative InterPro: Bacterial regulatory proteins TetR family; Family membership.
       0.607
ABO_0056
Hypothetical protein.
       0.439
ABO_0057
Conserved hypothetical protein.
       0.439
ABO_0063
Conserved hypothetical protein.
  
    0.424
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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