Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0063Conserved hypothetical protein. (744 aa)    
Predicted Functional Partners:
ABO_1848
(ABC transporter, ATP-binding protein/permease protein, putative) identified by match to PFAM protein family HMMPF03772 InterPro: AAA ATPase superfamily; Family membership.
  
  
 0.723
ABO_0062
Hypothetical protein.
       0.655
ABO_0438
Oxidoreductase; Nitrobenzoate reductase putative identified by sequencesimilarity; putative InterPro: Nitroreductase family; High confidence in function and specificity.
  
  
 0.574
ABO_0884
Nitroreductase family protein identified by match to PFAM protein family HMMPF00881 InterPro: Nitroreductase family; Family membership.
  
  
 0.574
pnb
Nitrobenzoate reductase, putative; Identified by sequencesimilarity; putative InterPro: Nitroreductase family; Family membership.
  
  
 0.574
ABO_0064
Hemerythrin-like protein (family member ship) identified by sequencesimilarity; putative InterPro: Hemerythrin; Family membership.
       0.524
ABO_0055
Acyltransferase identified by match to PFAM protein family HMMPF04241 InterPro: Phospholipid and glycerol acyltransferase (from motifs_6.msf); Family membership.
  
    0.424
ABO_0298
(ATP-binding cassette (ABC) transporters, permease protein, putative) identified by match to PFAM protein family HMMPF04306 InterPro: ABC 2 transport system integral membrane protein; High confidence in function and specificity.
  
  
 0.417
ABO_0879
(ABC transporter, permease protein, putative) identified by match to PFAM protein family HMMPF04306 InterPro: ABC 2 transport system integral membrane protein; Family membership.
  
  
 0.417
ABO_1847
(ABC transporter, ATP-binding protein, permease protein, putative) identified by match to TIGR protein family HMMTIGR01291; Family membership.
  
  
 0.417
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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