Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABO_0066Fumarylacetoacetate hydrolase family protein) identified by match to PFAM protein family HMMPF01557 InterPro: Fumarylacetoacetate (FAA) hydrolase family; Family membership. (233 aa)    
Predicted Functional Partners:
ABO_0067
Oxidoreductase with NAD+ or NADP+ as acceptor; Oxidoreductase FAD-binding putative identified by match to TIGR protein family HMMTIGR01679 InterPro: FAD linked oxidase C-terminal; Function unclear.
 
   
 0.852
alarS
(alanyl-tRNA synthetase); Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
 
      0.629
serA
D-3-phosphoglycerate dehydrogenase; Identified by sequence similarity; putative identified by match to PFAM protein family HMMPF02826 InterPro: D-isomer specific 2-hydroxyacid dehydrogenase; High confidence in function and specificity.
     
 0.606
ABO_1766
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0260 family.
      0.495
ABO_0071
Conserved hypothetical protein.
  
    0.449
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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